Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs873645 chr16:5005280 A/T 5.08E-5 479 31.27 29.63 26.37 KM Plot
PRAD rs882740 chr5:137992709 C/T 2.45E-5 494 30.87 31.27 27.33 KM Plot
PRAD rs889023 chr5:171762100 C/A 3.61E-5 471 29.95 32.6 28.63 KM Plot
PRAD rs901824 chr11:68206173 C/T 3.28E-6 494 26.33 33.37 29.4 KM Plot
PRAD rs901825 chr11:68206197 G/C 3.39E-6 493 29.4 33.22 26.33 KM Plot
PRAD rs907438 chr4:187066198 G/C 2.71E-6 483 32.4 28.3 31.27 KM Plot
PRAD rs9193 chr19:45496303 T/C 5.47E-5 485 45.2 30.9 30.33 KM Plot
PRAD rs922494 chr15:68120644 T/C 0.000174 489 33.25 28.13 27.58 KM Plot
PRAD rs9288011 chr2:178794127 A/G 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs9303417 chr17:58168322 A/G 1.76E-5 494 26.93 30.6 30.87 KM Plot
PRAD rs9327818 chr5:137999050 C/T 2.8E-5 487 30.73 31.42 27.33 KM Plot
PRAD rs9328158 chr6:3312311 A/G 0.000154 494 31.27 29.13 28.32 KM Plot
PRAD rs9346488 chr6:169326686 G/A 0.000118 491 30.73 31.37 27.03 KM Plot
PRAD rs9346491 chr6:169327747 G/A 1.69E-7 488 31.32 31.27 27.03 KM Plot
PRAD rs9346492 chr6:169328369 G/A 0.000154 490 31.18 31.28 27.35 KM Plot